dsh-bio-genie
Bioinformatics wish-coding plugin for DeepSeek Harness with 48 semantic tools, Biopython executor, and 46 curated skills.
Install
No clear install command was found in the current repository evidence.
Plugin Overview & Capabilities
AI-assisted organization based on the public repository snapshot. The content must be grounded in source evidence and does not replace compatibility or security verification.
Key Capabilities
- Execute arbitrary Biopython scripts via an isolated Python runtime (bio_python)
- Perform 48 semantic bioinformatics operations including GC content, translation, ORF finding, and k-mer analysis
- Run remote BLAST queries, multiple sequence alignments (MSA), and phylogenetic tree construction
- Integrate NCBI Entrez, PubMed literature retrieval, and Enrichr pathway/GO enrichment analyses
- Zero-configuration automatic bootstrapping of isolated Python environments with automatic mirror switching
- Self-healing execution (ACR) with retry loops and structured error diagnosis
- Session memory and transparent JSONL logging for reproducible bioinformatics workflows
- Provide publication-grade scientific figure generation guidance and templates
Useful For
- Analyzing DNA, RNA, and protein sequences directly using conversational prompts in DeepSeek Harness
- Searching NCBI databases and PubMed literature directly inside AI agent workflows
- Simulating restriction enzyme cloning, ORF detection, and primer design
- Generating publication-ready biological visualization plots and phylogenetic diagrams
Who It Fits
- Bioinformaticians
- Computational biologists
- Life science researchers and students
- Biotech developers using DeepSeek Harness
Documented Limitations
- Initial bootstrap requires internet access to download uv, CPython, and Python dependencies
- External multi-sequence alignment binaries (like ClustalW or MUSCLE) must be present locally for local MSA execution
- Requires Node.js ^22.19 or >=24 compatible with DeepSeek Harness
DSH Compatibility
Version-specific runtime evidence collected by DSH Plugin. A missing result means we have not tested that combination yet.
Security Signals
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Source & Registry Notes
Public provenance, Registry classification, and the latest source check for this entry, kept separate from runtime verification.
- Source repository
- moonbowterfly/dsh-bio-genie
- Registry source
- GitHub · dsh-plugin topic
- Registry classification
- Plugin Bundle
- Source checked
- 899fc23 · 2026-09-18
This project is independently indexed from public source information. DSH Plugin is not affiliated with DeepSeek or the plugin author. Always check the author repository before installation.
Repository Activity
- GitHub stars
- 2GitHub stars
- Forks
- 0
- Open issues
- 0
- Last commit
- 2026-09-16
- Last release
- 2026-09-10
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