dsh-bio-genie
Bioinformatics wish-coding bundle for DeepSeek Harness with 58 semantic tools, Biopython executor, and 51 domain skills.
Install
No clear install command was found in the current repository evidence.
Plugin Overview & Capabilities
AI-assisted organization based on the public repository snapshot. The content must be grounded in source evidence and does not replace compatibility or security verification.
Key Capabilities
- 58 semantic bioinformatics tools covering sequence operations, BLAST searches, MSA, phylogenetic trees, plasmid lookup, and UniProt queries
- Self-bootstrapping isolated Python 3.12 environment via uv with automated domestic/global mirror failover and SHA256 verification
- bio_python arbitrary code executor supporting Biopython, publication-ready figures, and metabolic modeling
- 51 domain skills, protocol recipes, research methodology guides, and agent instructions
- Automatic code repair (ACR) retry loop up to 3 times on execution failure
- Integrated DSH agent preset 'bio-genie' for specialized scientific persona onboarding
Useful For
- Analyzing DNA, RNA, and protein sequences directly from natural language prompts
- Automating multi-sequence alignments, phylogenetic tree generation, and publication-grade visualizations
- Conducting remote database queries against NCBI BLAST, Entrez, Addgene, and UniProt
- Simulating cloning, primer design with Primer3, and CRISPR guide target discovery
Who It Fits
- Bioinformatics researchers and computational biologists
- Life science researchers using DeepSeek Harness for assisted sequence and plasmid analysis
- Students and scientists requiring streamlined protocol execution and publication-quality figures
Documented Limitations
- Initial environment bootstrap requires network connectivity to download uv and isolated Python runtimes
- Remote database tools (NCBI, UniProt, Addgene) depend on third-party API availability and network access
- On DSH 0.1.x, package lifecycle build scripts must be approved in pnpm to auto-copy agent presets
DSH Compatibility
Version-specific runtime evidence collected by DSH Plugin. A missing result means we have not tested that combination yet.
Security Signals
Objective signals discovered from package metadata and source inspection. These are not a guarantee that a plugin is safe.
package.json declares 5 runtime, 0 development, 3 peer, and 0 optional dependencies.
package.json declares DSH bundle metadata.
GitHub reports the repository license as NOASSERTION.
A root package.json was captured and can be inspected by the registry.
package.json declares a postinstall lifecycle script that may run during relevant package installation workflows.
Public GitHub source metadata is available for this registry snapshot.
Source & Registry Notes
Public provenance, Registry classification, and the latest source check for this entry, kept separate from runtime verification.
- Source repository
- moonbowterfly/dsh-bio-genie
- Registry source
- GitHub · dsh-plugin topic
- Registry classification
- Plugin Bundle
- Source checked
- 4c61a33 · 2026-10-14
This project is independently indexed from public source information. DSH Plugin is not affiliated with DeepSeek or the plugin author. Always check the author repository before installation.
Repository Activity
- GitHub stars
- 2GitHub stars
- Forks
- 0
- Open issues
- 0
- Last commit
- 2026-10-14
- Last release
- 2026-10-07
Related DSH Plugins
Ranked by overlapping capabilities, use cases, plugin type, categories, and DSH profile.
Connect DeepSeek Harness to your real, logged-in Chrome or Edge browser for automated navigation, inspections, and web debugging.
View plugin →Full-featured AI image generation studio for DeepSeek Harness with chat generation, infinite canvas, batch studio, and ComfyUI support.
View plugin →Pre-execution safety net blocking destructive shell commands and secret leaks in coding agents.
View plugin →Vision routing and pixel-level tools for text-only DeepSeek Harness agents with built-in free fallback.
View plugin →