dsh-bio-human-microbiome-function-mining
DeepSeek Harness plugin bundle for human microbiome enzyme discovery and functional dark matter mining.
Install
No clear install command was found in the current repository evidence.
Plugin Overview & Capabilities
AI-assisted organization based on the public repository snapshot. The content must be grounded in source evidence and does not replace compatibility or security verification.
Key Capabilities
- Converts target enzymes, EC numbers, or substrate-product pairs into standardized target function cards
- Orchestrates CD-HIT deduplication and DIAMOND sequence homology searches against candidate proteomes
- Manages structural prediction and US-align comparisons with fallback to DEER retrieval
- Integrates FedKEA enzyme classification and verified literature citations with PMID/DOI tracking
- Computes deterministic candidate ranking and compiles reproducible wet-lab experimental designs
Useful For
- Discovering novel metabolic enzymes in human microbiome datasets
- Predicting functional dark matter and uncharacterized microbial proteins matching specific reactions
- Drafting falsifiable hypotheses and wet-lab validation protocols for candidate microbial enzymes
Who It Fits
- Bioinformatics researchers
- Microbiome scientists
- Computational biologists developing automated protein discovery pipelines
Documented Limitations
- Requires external bioinformatics binaries (DIAMOND, CD-HIT, US-align, DEER, Bakta, FedKEA) to be installed and configured locally by the user
- Does not bundle compute infrastructure or biological sequence/structure databases
DSH Compatibility
Version-specific runtime evidence collected by DSH Plugin. A missing result means we have not tested that combination yet.
Security Signals
Objective signals discovered from package metadata and source inspection. These are not a guarantee that a plugin is safe.
package.json declares 0 runtime, 0 development, 3 peer, and 0 optional dependencies.
package.json declares DSH bundle metadata.
GitHub reports the repository license as MIT.
A root package.json was captured and can be inspected by the registry.
package.json declares a postinstall lifecycle script that may run during relevant package installation workflows.
Public GitHub source metadata is available for this registry snapshot.
Source & Registry Notes
Public provenance, Registry classification, and the latest source check for this entry, kept separate from runtime verification.
- Source repository
- Liuyixin-lily/dsh-bio-human-microbiome-function-mining
- Registry source
- GitHub · dsh-plugin topic
- Registry classification
- Plugin Bundle
- Source checked
- 43d0233 · 2026-10-25
This project is independently indexed from public source information. DSH Plugin is not affiliated with DeepSeek or the plugin author. Always check the author repository before installation.
Repository Activity
- GitHub stars
- 0GitHub stars
- Forks
- 0
- Open issues
- 0
- Last commit
- 2026-10-12
- Last release
- No release detected
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