dsh-biomni
Biomedical research plugin for DeepSeek Harness with persistent Python sessions and Biomni integration.
Install
$ dsh plugin --profile web add dsh-biomniPlugin Overview & Capabilities
AI-assisted organization based on the public repository snapshot. The content must be grounded in source evidence and does not replace compatibility or security verification.
Key Capabilities
- Persistent per-session Python interpreter maintaining variables, models, and imports across tool calls
- On-demand skill modules mapping Biomni biomedical research functions with precise parameter signatures
- Data lake browser and management for 76 biomedical datasets with explicit licensing indicators
- Accurate environment probing and reporting via /biomni slash commands and DSH Settings UI
- Dedicated output directory binding (BIOMNI_OUT) with inline figure and tabular data previews in Settings
- Configurable idle timeout to automatically retire inactive Python processes and notify the agent
Useful For
- Executing multi-step bioinformatics and computational biology research workflows
- Running verified Biomni functions for molecular analysis, drug discovery, and genomic data processing
- Accessing and querying local biomedical dataset caches without redundant downloads
- Viewing generated biomedical plots, tables, and computation outputs directly in DeepSeek Harness
Who It Fits
- Bioinformatics researchers
- Biomedical data scientists
- Life science research teams using DeepSeek Harness
Documented Limitations
- Requires Python 3.11+ and pre-configured virtual environment or container for running Biomni functions
- Non-commercial datasets in Biomni require explicit user acknowledgement before downloading
- Certain specialized packages (e.g., rdkit, cobra) require optional extra dependencies due to binary size
DSH Compatibility
Version-specific runtime evidence collected by DSH Plugin. A missing result means we have not tested that combination yet.
Security Signals
Objective signals discovered from package metadata and source inspection. These are not a guarantee that a plugin is safe.
package.json declares 1 runtime, 25 development, 4 peer, and 0 optional dependencies.
package.json declares DSH bundle metadata.
GitHub reports the repository license as MIT.
A root package.json was captured and can be inspected by the registry.
package.json declares a prepare lifecycle script that may run during relevant package installation workflows.
Public GitHub source metadata is available for this registry snapshot.
Source & Registry Notes
Public provenance, Registry classification, and the latest source check for this entry, kept separate from runtime verification.
- Source repository
- ZhuYanTech/dsh-biomni
- Registry source
- GitHub · dsh-plugin topic
- Registry classification
- Plugin
- Source checked
- cc4bf89 · 2026-10-23
This project is independently indexed from public source information. DSH Plugin is not affiliated with DeepSeek or the plugin author. Always check the author repository before installation.
Repository Activity
- GitHub stars
- 1GitHub stars
- Forks
- 0
- Open issues
- 0
- Last commit
- 2026-10-17
- Last release
- No release detected
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