DeepSeek Harness PluginManifest Valid

dsh-biomni

Biomedical research plugin for DeepSeek Harness with persistent Python sessions and Biomni integration.

Terminal & TUIDeveloper ToolsSkills & Workflows

1GitHub Stars0ForksUpdated2026-09-01

Install

$ dsh plugin --profile web add dsh-biomni

Plugin Overview & Capabilities

AI-assisted organization based on the public repository snapshot. The content must be grounded in source evidence and does not replace compatibility or security verification.

source-grounded

dsh-biomni equips DeepSeek Harness agents with a persistent per-session Python interpreter integrated with the Biomni biomedical tool library, bioinformatics tools, and dataset catalogs. It probes the host machine's environment before advertising functions or datasets to prevent hallucinated scripts and broken dependencies.

Key Capabilities

Persistent per-session Python interpreter maintaining variables, models, and imports across tool calls
On-demand skill modules mapping Biomni biomedical research functions with precise parameter signatures
Data lake browser and management for 76 biomedical datasets with explicit licensing indicators
Accurate environment probing and reporting via /biomni slash commands and DSH Settings UI
Dedicated output directory binding (BIOMNI_OUT) with inline figure and tabular data previews in Settings
Configurable idle timeout to automatically retire inactive Python processes and notify the agent

Useful For

Executing multi-step bioinformatics and computational biology research workflows
Running verified Biomni functions for molecular analysis, drug discovery, and genomic data processing
Accessing and querying local biomedical dataset caches without redundant downloads
Viewing generated biomedical plots, tables, and computation outputs directly in DeepSeek Harness

Who It Fits

Bioinformatics researchers
Biomedical data scientists
Life science research teams using DeepSeek Harness

Documented Limitations

Requires Python 3.11+ and pre-configured virtual environment or container for running Biomni functions
Non-commercial datasets in Biomni require explicit user acknowledgement before downloading
Certain specialized packages (e.g., rdkit, cobra) require optional extra dependencies due to binary size

DSH Compatibility

Version-specific runtime evidence collected by DSH Plugin. A missing result means we have not tested that combination yet.

Not tested yetNo runtime compatibility tests have been published yet.

Security Signals

Objective signals discovered from package metadata and source inspection. These are not a guarantee that a plugin is safe.

Dependency Counts

package.json declares 1 runtime, 24 development, 4 peer, and 0 optional dependencies.

info

Dsh Bundle Declared

package.json declares DSH bundle metadata.

info

License Declared

GitHub reports the repository license as MIT.

info

Package Manifest Available

A root package.json was captured and can be inspected by the registry.

info

Prepare Script Detected

package.json declares a prepare lifecycle script that may run during relevant package installation workflows.

info

Source Available

Public GitHub source metadata is available for this registry snapshot.

info

Source & Registry Notes

Public provenance, Registry classification, and the latest source check for this entry, kept separate from runtime verification.

Source repository: ZhuYanTech/dsh-biomni
Registry source: GitHub · dsh-plugin topic
Registry classification: Plugin
Source checked: 22d2d9f · 2026-09-10

This project is independently indexed from public source information. DSH Plugin is not affiliated with DeepSeek or the plugin author. Always check the author repository before installation.