dsh-omicos
DeepSeek Harness plugin for running OmicVerse/OmicOS bioinformatics analyses through a persistent local Python kernel.
Install
$ dsh plugin --profile web add @omicverse/dsh-omicosPlugin Overview & Capabilities
AI-assisted organization based on the public repository snapshot. The content must be grounded in source evidence and does not replace compatibility or security verification.
Key Capabilities
- Runs OmicOS analysis turns in a workspace-bound persistent Python kernel.
- Supports background analysis jobs with live tqdm progress.
- Searches the installed OmicOS skill and agent catalog.
- Lists kernel variables and inspects individual variables, including AnnData preprocessing state.
- Lists files generated during the current analysis conversation.
- Provides login, status, account, logout, and kernel-stop commands.
- Adds an OmicOS account tab and live analysis tool view to the DSH web profile.
- Can optionally register an artifacts tab when dsh-better-sidebar is installed.
Useful For
- Conducting iterative single-cell or spatial-transcriptomics workflows while retaining kernel state across turns.
- Delegating bioinformatics tasks to OmicOS after searching its installed analysis catalog.
- Reviewing AnnData state before selecting a subsequent preprocessing or analysis step.
- Monitoring long-running analyses and inspecting their generated figures or files.
- Managing an OmicOS account from within the DSH web experience.
Who It Fits
- Bioinformatics practitioners using DeepSeek Harness.
- Single-cell and spatial-transcriptomics analysts.
- Researchers using OmicVerse or OmicOS workflows.
Documented Limitations
- Requires DSH 0.1.0-rc.6.
- Cloud-backed models and higher plan tiers require an OmicOS account.
- Analysis tools run with permission_mode set to full; mid-flight DSH approval bridging is planned but not implemented.
- Configuration patch rows replace the complete configuration rather than deep-merging.
- The optional artifacts-tab integration requires dsh-better-sidebar.
DSH Compatibility
Version-specific runtime evidence collected by DSH Plugin. A missing result means we have not tested that combination yet.
Security Signals
Objective signals discovered from package metadata and source inspection. These are not a guarantee that a plugin is safe.
package.json declares 2 runtime, 26 development, 7 peer, and 0 optional dependencies.
package.json declares DSH bundle metadata.
GitHub reports the repository license as GPL-3.0.
A root package.json was captured and can be inspected by the registry.
package.json declares a prepare lifecycle script that may run during relevant package installation workflows.
Public GitHub source metadata is available for this registry snapshot.
Source & Registry Notes
Public provenance, Registry classification, and the latest source check for this entry, kept separate from runtime verification.
- Source repository
- omicverse/dsh-omicos
- Registry source
- GitHub · dsh-plugin topic
- Registry classification
- Plugin
- Source checked
- 3b4d3fc · 2026-09-18
This project is independently indexed from public source information. DSH Plugin is not affiliated with DeepSeek or the plugin author. Always check the author repository before installation.
Repository Activity
- GitHub stars
- 1GitHub stars
- Forks
- 0
- Open issues
- 0
- Last commit
- 2026-08-17
- Last release
- No release detected
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